Organizing Pre-Sets Edit
However you choose to re-organize pre-sets, it is recommended that you read "Managing Pre-Sets".
Some users organize their pre-sets so that successive banks will follow the progression of guitar parts for particular songs. For example, 01 may be set for a tone to be played under vocals, whereas 02 may be louder and modified for a lead section. For Android users, the REMUDA App's Drag and Drop Preset Reorganizing and Performance Mode Song Preset features makes this very easy!
A suggestion that comes up frequently is to organize pre-sets, in order of a set-list. The benefit of this method is obvious, but there are draw-backs such as having to manage pre-sets as set-lists are modified. For Android users, REMUDA's Drag and Drop Preset Reorganizing and Performance Mode Set List Features makes this very easy!
An alternative idea is to organize pre-sets by amp. For example, grouping unique '65 Princeton pre-sets in banks 01-10, '59 Bassman pre-sets 11-20, etc.
Others have shared that they have organized their pre-sets by tone (e.g., clean, crunch, high-gain, etc.)